LIG Audit Status

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Batch audit-20260421-labels-seed42 · created 2026-04-21 07:03 · seed 42

caucasian
25 reviewed / 25 total
0 pending
Confirmed caucasian 25 · Not caucasian on review 0
white
25 reviewed / 25 total
0 pending
Confirmed white 24 · Not white on review 1
european
10 reviewed / 25 total
15 pending
Confirmed european 10 · Not european on review 0
other
25 reviewed / 25 total
0 pending
Confirmed other 25 · Not other on review 0
none of these labels
0 reviewed / 100 total
100 pending
Confirmed none of these labels 0 · Uses tracked labels on review 0

["A Comparison of <scp>B</scp>ayesian and Frequentist Approaches to Incorporating External Information for the Prediction of Prostate Cancer Risk"]

Genetic Epidemiology · 2012 · article 110315011 · 10.1002/gepi.21600

Review target: caucasian. Review status: reviewed

Audit result: confirmed caucasian · reviewer georgina · 2026-05-19 21:49

Classifier flags: caucasian

<jats:p>We present the most comprehensive comparison to date of the predictive benefit of genetics in addition to currently used clinical variables, using genotype data for 33 single‐nucleotide polymorphisms (<jats:styled-content style="fixed-case">SNP</jats:styled-content>s) in 1,547 <jats:styled-content style="fixed-case">C</jats:styled-content>aucasian men from the placebo arm of the REduction by DUtasteride of prostate Cancer Events (<jats:styled-content style="fixed-case">REDUCE</jats:styled-content>®) trial. Moreover, we conducted a detailed comparison of three techniques for incorporating genetics into clinical risk prediction. The first method was a standard logistic regression model, which included separate terms for the clinical covariates and for each of the genetic markers. This approach ignores a substantial amount of external information concerning effect sizes for these Genome Wide Association Study (<jats:styled-content style="fixed-case">GWAS</jats:styled-content>)‐replicated <jats:styled-content style="fixed-case">SNP</jats:styled-content>s. The second and third methods investigated two possible approaches to incorporating meta‐analysed external <jats:styled-content style="fixed-case">SNP</jats:styled-content> effect estimates – one via a weighted <jats:styled-content style="fixed-case">PCa</jats:styled-content> 'risk' score based solely on the meta analysis estimates, and the other incorporating both the current and prior data via informative priors in a <jats:styled-content style="fixed-case">B</jats:styled-content>ayesian logistic regression model. All methods demonstrated a slight improvement in predictive performance upon incorporation of genetics. The two methods that incorporated external information showed the greatest receiver‐operating‐characteristic <jats:styled-content style="fixed-case">AUC</jats:styled-content>s increase from 0.61 to 0.64. The value of our methods comparison is likely to lie in observations of performance similarities, rather than difference, between three approaches of very different resource requirements. The two methods that included external information performed best, but only marginally despite substantial differences in complexity.</jats:p>
Target Article Journal Status Outcome Reviewer Updated
caucasian ["Genetic counseling student demographics: an empirical comparison of two cohorts"]
article 43600051
Journal of Genetic Counseling
2020
reviewed confirmed caucasian georgina 2026-05-19 21:53
caucasian ["A case–control genome wide association study of substance use disorder (SUD) identifies novel variants on chromosome 7p14.1 in patients from the United Arab Emirates (UAE)"]
article 59414975
American Journal of Medical Genetics Part B: Neuropsychiatric Genetics
2018
reviewed confirmed caucasian georgina 2026-05-19 21:46
caucasian ["Severe bleeding with subclinical oculocutaneous albinism in a patient with a novel <i>HPS6</i> missense variant"]
article 60580025
American Journal of Medical Genetics Part A
2018
reviewed confirmed caucasian georgina 2026-05-19 21:46
caucasian ["A novel <i>AXIN2</i> gene mutation in sagittal synostosis"]
article 62719976
American Journal of Medical Genetics Part A
2018
reviewed confirmed caucasian georgina 2026-05-19 21:46
caucasian ["Cole‐Carpenter syndrome in a patient from Thailand"]
article 62845032
American Journal of Medical Genetics Part A
2018
reviewed confirmed caucasian georgina 2026-05-19 21:46
caucasian ["Genetic aspects of Huntington's disease in Latin America. A systematic review"]
article 89016947
Clinical Genetics
2015
reviewed confirmed caucasian georgina 2026-05-19 21:47
caucasian ["Who is at Risk for Compassion Fatigue? An Investigation of Genetic Counselor Demographics, Anxiety, Compassion Satisfaction, and Burnout"]
article 97820502
Journal of Genetic Counseling
2014
reviewed confirmed caucasian georgina 2026-05-19 21:47
caucasian ["Reaffirmation of GAK, but not HLA‐DRA, as a Parkinson's disease susceptibility gene in a Taiwanese population"]
article 102654974
American Journal of Medical Genetics Part B: Neuropsychiatric Genetics
2013
reviewed confirmed caucasian georgina 2026-05-19 21:48
caucasian ["A Comparison of <scp>B</scp>ayesian and Frequentist Approaches to Incorporating External Information for the Prediction of Prostate Cancer Risk"]
article 110315011
Genetic Epidemiology
2012
reviewed confirmed caucasian georgina 2026-05-19 21:49
caucasian ["Association of <i>ANK3</i> with bipolar disorder confirmed in East Asia"]
article 121850010
American Journal of Medical Genetics Part B: Neuropsychiatric Genetics
2011
reviewed confirmed caucasian georgina 2026-05-19 21:49
caucasian ["Pi phenotypes of alpha<sub>1</sub>‐antitrypsin in Southern England: Identification of M subtypes and implications for genetic studies"]
article 124861743
Clinical Genetics
1979
reviewed confirmed caucasian georgina 2026-05-19 21:49
caucasian ["Batten disease (Spielmeyer‐Sjogren disease) and haptoglobins (HP): indication of linkage and assignment to chr. 16"]
article 124891598
Clinical Genetics
1989
reviewed confirmed caucasian georgina 2026-05-19 21:49
caucasian ["The angiotensin‐converting enzyme (ACE) genetic polymorphism: its relationship with plasma ACE level and myocardial infarction"]
article 124907657
Clinical Genetics
1994
reviewed confirmed caucasian georgina 2026-05-19 21:50
caucasian ["The Utility of Genetic Counseling Prior to Offering First Trimester Screening Options"]
article 130870140
Journal of Genetic Counseling
2009
reviewed confirmed caucasian georgina 2026-05-19 21:50
caucasian ["COMT val158met influence on electroconvulsive therapy response in major depression"]
article 131955077
American Journal of Medical Genetics Part B: Neuropsychiatric Genetics
2009
reviewed confirmed caucasian georgina 2026-05-19 21:50
caucasian ["Haplogroup analysis supports a pathogenic role for the 7510T&gt;C mutation of mitochondrial tRNA<sup>Ser(UCN)</sup> in sensorineural hearing loss"]
article 132778489
Clinical Genetics
2007
reviewed confirmed caucasian georgina 2026-05-19 21:50
caucasian ["Genome‐widely significant evidence of linkage of schizophrenia to chromosomes 2p24.3 and 6q27 in an SNP‐Based analysis of Korean families"]
article 134074995
American Journal of Medical Genetics Part B: Neuropsychiatric Genetics
2009
reviewed confirmed caucasian georgina 2026-05-19 21:50
caucasian ["Association analysis of dynamin‐binding protein (<i>DNMBP</i>) on chromosome 10q with late onset Alzheimer's disease in a large caucasian UK sample"]
article 136339957
American Journal of Medical Genetics Part B: Neuropsychiatric Genetics
2008
reviewed confirmed caucasian georgina 2026-05-19 21:50
caucasian ["Familial CHARGE syndrome because of <i>CHD7</i> mutation: clinical intra‐ and interfamilial variability"]
article 140508992
Clinical Genetics
2007
reviewed confirmed caucasian georgina 2026-05-19 21:51
caucasian ["Clinical and genetic analysis of two Tunisian otosclerosis families"]
article 141540018
American Journal of Medical Genetics Part A
2007
reviewed confirmed caucasian georgina 2026-05-19 21:51
caucasian ["Thromboxane synthase (TBXAS1) polymorphisms in African-American and Caucasian populations: evidence for selective pressure"]
article 152400290
Human Mutation
2005
reviewed confirmed caucasian georgina 2026-05-19 21:51
caucasian ["Mutation frequencies for glycogen storage disease Ia in the Ashkenazi Jewish population"]
article 158799951
American Journal of Medical Genetics Part A
2004
reviewed confirmed caucasian georgina 2026-05-19 21:51
caucasian ["A new insight into fragile X syndrome among Basque population"]
article 158990096
American Journal of Medical Genetics Part A
2004
reviewed confirmed caucasian georgina 2026-05-19 21:51
caucasian ["Identification of 21 novel glucokinase (GCK) mutations in UK and European Caucasians with maturity-onset diabetes of the young (MODY)"]
article 161615354
Human Mutation
2003
reviewed confirmed caucasian georgina 2026-05-19 21:51
caucasian ["CHD7 variants associated with hearing loss and enlargement of the vestibular aqueduct"]
article 172329127
Human Genetics
2023
reviewed confirmed caucasian georgina 2026-05-19 21:52