| False Discovery Rates for Rare Variants From Sequenced Data |
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| Pathway‐Based Association Study of Multiple Candidate Genes and Multiple Traits Using Structural Equation Models |
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| Tailored Selection of Study Individuals to be Sequenced in Order to Improve the Accuracy of Genotype Imputation |
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✓ |
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✓ |
European and Asian study scenarios; African‐study scenario; Asian study scenarios |
| Global Analysis of Methylation Profiles From High Resolution CpG Data |
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| Complete Effect‐Profile Assessment in Association Studies With Multiple Genetic and Multiple Environmental Factors |
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| Integrative Analysis of Micro‐RNA, Gene Expression, and Survival of Glioblastoma Multiforme |
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| Principal Component Regression and Linear Mixed Model in Association Analysis of Structured Samples: Competitors or Complements? |
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| Issue Information |
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| Genetic Data Simulators and their Applications: An Overview |
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| The Critical Need for Computational Methods and Software for Simulating Complex Genetic and Genomic Data |
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| Population Genetic Simulations of Complex Phenotypes with Implications for Rare Variant Association Tests |
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✓ |
✓ |
African populations; non‑Africans |
| Fine‐Mapping Additive and Dominant SNP Effects Using Group‐LASSO and Fractional Resample Model Averaging |
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| Reproducible Simulations of Realistic Samples for Next‐Generation Sequencing Studies Using <i>Variant Simulation Tools</i> |
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| Heuristic Identification of Biological Architectures for Simulating Complex Hierarchical Genetic Interactions |
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| Hierarchical Bayesian Model for Rare Variant Association Analysis Integrating Genotype Uncertainty in Human Sequence Data |
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✓ |
✓ |
Finnish |
| Genetic Markers Associated With Plasma Protein C Level in African Americans: The Atherosclerosis Risk in Communities (ARIC) Study |
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| A Method for Gene‐Based Pathway Analysis Using Genomewide Association Study Summary Statistics Reveals Nine New Type 1 Diabetes Associations |
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| Genetic Simulation Tools for Post‐Genome Wide Association Studies of Complex Diseases |
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| A Weighted<i>U</i>-Statistic for Genetic Association Analyses of Sequencing Data |
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| Functional-Mixed Effects Models for Candidate Genetic Mapping in Imaging Genetic Studies |
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| SeqSIMLA2: Simulating Correlated Quantitative Traits Accounting for Shared Environmental Effects in User‐Specified Pedigree Structure |
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| A Novel Method for Detecting Association Between DNA Methylation and Diseases Using Spatial Information |
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| Use of an Electronic Medical Record to Create the Marshfield Clinic Twin/Multiple Birth Cohort |
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| Generalized Functional Linear Models for Gene‐Based Case‐Control Association Studies |
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| Functional Logistic Regression Approach to Detecting Gene by Longitudinal Environmental Exposure Interaction in a Case‐Control Study |
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| A Unified Sparse Representation for Sequence Variant Identification for Complex Traits |
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| Comparing Computational Methods for Identification of Allele‐Specific Expression based on Next Generation Sequencing Data |
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| A Custom Correlation Coefficient (CCC) Approach for Fast Identification of Multi‐SNP Association Patterns in Genome‐Wide SNPs Data |
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| Adjusting Family Relatedness in Data-driven Burden Test of Rare Variants |
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| Drinking From the Holy Grail: Analysis of Whole‐Genome Sequencing From the Genetic Analysis Workshop 18 |
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✓ |
✓ |
Mexican American; admixed population |
| Methods for Collapsing Multiple Rare Variants in Whole‐Genome Sequence Data |
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| Summary of Results and Discussions From the Gene‐Based Tests Group at Genetic Analysis Workshop 18 |
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| Longitudinal Data Analysis in Genome‐Wide Association Studies |
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| Longitudinal Data Analysis for Genetic Studies in the Whole‐Genome Sequencing Era |
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| Value of Mendelian Laws of Segregation in Families: Data Quality Control, Imputation, and Beyond |
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| Complex Pedigrees in the Sequencing Era: To Track Transmissions or Decorrelate? |
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| Genetic Prediction in the Genetic Analysis Workshop 18 Sequencing Data |
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| Pathway Analysis Approaches for Rare and Common Variants: Insights From Genetic Analysis Workshop 18 |
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| Population‐Based Association and Gene by Environment Interactions in Genetic Analysis Workshop 18 |
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| Multivariate Analyses of Blood Pressure Related Phenotypes in a Longitudinal Framework: Insights From Genetic Analysis Workshop 18 |
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| Local and Global Ancestry Inference and Applications to Genetic Association Analysis for Admixed Populations |
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✓ |
✓ |
Mexican American; admixed populations; ancestry admixture; admixed samples |
| Testing Genetic Association With Rare and Common Variants in Family Data |
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✓ |
✓ |
Mexican American families |
| Applications of Machine Learning and Data Mining Methods to Detect Associations of Rare and Common Variants with Complex Traits |
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✓ |
✓ |
Mexican American pedigrees |
| Challenges of Linkage Analysis in the Era of Whole‐Genome Sequencing |
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| Admixture Mapping Identifies a Quantitative Trait Locus Associated with FEV<sub>1</sub>/FVC in the COPDGene Study |
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✓ |
✓ |
✓ |
European ancestral populations; African Americans; African ancestral populations; Global African ancestry |
| A Note on the Efficiencies of Sampling Strategies in Two‐Stage Bayesian Regional Fine Mapping of a Quantitative Trait |
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| Combining Family‐ and Population‐Based Imputation Data for Association Analysis of Rare and Common Variants in Large Pedigrees |
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| A Rare Variant Association Test Based on Combinations of Single-Variant Tests |
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| Detecting Disease Variants in Case-Parent Trio Studies Using the Bioconductor Software Package<tt>trio</tt> |
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| Estimating and Testing Pleiotropy of Single Genetic Variant for Two Quantitative Traits |
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| Flexible and Robust Methods for Rare-Variant Testing of Quantitative Traits in Trios and Nuclear Families |
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| The Role of Local Ancestry Adjustment in Association Studies Using Admixed Populations |
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| PedBLIMP: Extending Linear Predictors to Impute Genotypes in Pedigrees |
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| TARV: Tree-based Analysis of Rare Variants Identifying Risk Modifying Variants in<i>CTNNA2</i>and<i>CNTNAP2</i>for Alcohol Addiction |
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| X-Chromosome Genetic Association Test Accounting for X-Inactivation, Skewed X-Inactivation, and Escape from X-Inactivation |
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| Genome-wide Association and Network Analysis of Lung Function in the Framingham Heart Study |
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| A General Efficient and Flexible Approach for Genome-Wide Association Analyses of Imputed Genotypes in Family-Based Designs |
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| Harmonization of Study and Reference Data by PhaseLift: Saving Time When Imputing Study Data |
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| Celebrating the 30th Anniversary of<i>Genetic Epidemiology</i>: How to Define Our Scope?<sup>†</sup> |
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| Genome-Wide Genetic and Transcriptomic Investigation of Variation in Antibody Response to Dietary Antigens |
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| Genome-Wide Investigation of Regional Blood-Based DNA Methylation Adjusted for Complete Blood Counts Implicates BNC2 in Ovarian Cancer |
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| Efficient Generalized Least Squares Method for Mixed Population and Family-based Samples in Genome-wide Association Studies |
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| Kernel-Machine Testing Coupled with a Rank-Truncation Method for Genetic Pathway Analysis |
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| The Role of Environmental Heterogeneity in Meta-Analysis of Gene-Environment Interactions With Quantitative Traits |
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| Poly-Omic Prediction of Complex Traits: OmicKriging |
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| Whole Genome Prediction of Bladder Cancer Risk With the Bayesian LASSO |
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| Meta-Analysis of Sequencing Studies With Heterogeneous Genetic Associations |
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| Valid Monte Carlo Permutation Tests for Genetic Case‐Control Studies With Missing Genotypes |
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| Identifying Gene–Environment and Gene–Gene Interactions Using a Progressive Penalization Approach |
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| The ENCODE Project and Perspectives on Pathways |
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| Detecting Genetic Interactions in Pathway‐Based Genome‐Wide Association Studies |
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| Detection of Mendelian Consistent Genotyping Errors in Pedigrees |
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| An Empirical Comparison of Meta‐analysis and Mega‐analysis of Individual Participant Data for Identifying Gene‐Environment Interactions |
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| Genome‐Wide Family‐Based Linkage Analysis of Exome Chip Variants and Cardiometabolic Risk |
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✓ |
✓ |
African‐American; Hispanic |
| Bayesian Latent Variable Collapsing Model for Detecting Rare Variant Interaction Effect in Twin Study |
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| Novel Statistical Tools for Management of Public Databases Facilitate Community-Wide Replicability and Control of False Discovery |
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| Detecting Maternal-Fetal Genotype Interactions Associated With Conotruncal Heart Defects: A Haplotype-Based Analysis With Penalized Logistic Regression |
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| The Association Between Global DNA Methylation and Telomere Length in a Longitudinal Study of Boilermakers |
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| A Penalized Robust Method for Identifying Gene-Environment Interactions |
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| Imputation Without Doing Imputation: A New Method for the Detection of Non‐Genotyped Causal Variants |
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| A System-Level Pathway-Phenotype Association Analysis Using Synthetic Feature Random Forest |
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| Estimating Genome‐Wide Significance for Whole‐Genome Sequencing Studies |
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| A Generalized Genetic Random Field Method for the Genetic Association Analysis of Sequencing Data |
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| Accounting for Population Stratification in DNA Methylation Studies |
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| Accounting for Linkage Disequilibrium in Association Analysis of Diverse Populations |
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| Sequence Kernel Association Test for Survival Traits |
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| Testing Gene–Gene Interactions in Genome Wide Association Studies |
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| Using Item Response Theory to Model Multiple Phenotypes and Their Joint Heritability in Family Data |
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| Integrative Analysis of High‐throughput Cancer Studies With Contrasted Penalization |
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| Leveraging Family History in Population‐Based Case‐Control Association Studies |
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| How to Include Chromosome X in Your Genome‐Wide Association Study |
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